Пытаюсь установить mpi4py, получаю ошибку: Не удалось собрать колеса. ⇐ Python

[Anonymous]

Я пытаюсь установить библиотеку mpi4py, но выдает следующую ошибку:

Код: Выделить всё

**(biomedparse) vusynhathoang@Nevermore:/mnt/d/AI/BiomedParse$ pip install mpi4py**
Collecting mpi4py
Using cached mpi4py-4.0.1.tar.gz (466 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Installing backend dependencies ... done
Preparing metadata (pyproject.toml) ... done
Building wheels for collected packages: mpi4py
Building wheel for mpi4py (pyproject.toml) ...  error
error: subprocess-exited-with-error

× Building wheel for mpi4py (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [316 lines of output]
running bdist_wheel
running build
running build_src
using Cython 3.0.11
cythonizing 'src/mpi4py/MPI.pyx' -> 'src/mpi4py/MPI.c'
running build_py
creating build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/run.py -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/bench.py -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/typing.py -> build/lib.linux-x86_64-cpython-39/mpi4py
creating build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/_core.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/util.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
creating build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/util/dtlib.py -> build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/util/sync.py -> build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/util/__init__.py -> build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/util/pool.py -> build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/util/pkl5.py -> build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/__main__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/typing.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/__init__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/MPI.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/run.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/bench.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/py.typed -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/MPI_api.h -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/MPI.h -> build/lib.linux-x86_64-cpython-39/mpi4py
creating build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/pycapi.h -> build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py
copying src/mpi4py/futures/__main__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/__init__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/pool.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/util.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/server.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/aplus.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/_base.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/_core.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/util/__init__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/util/pool.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/util/sync.pyi ->  build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/util/pkl5.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/util/dtlib.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/util
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler:    /usr/bin/mpicc
MPI C++ compiler:  /usr/bin/mpicxx
checking for MPI compile and link ...
/usr/bin/mpicc -pthread -B /home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/vusynhathoang/miniconda3/envs/biomedparse/include -I/home/vusynhathoang/miniconda3/envs/biomedparse/include -fPIC -O2 -isystem /home/vusynhathoang/miniconda3/envs/biomedparse/include -fPIC -I/home/vusynhathoang/miniconda3/envs/biomedparse/include/python3.9 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
/usr/bin/mpicc -pthread -B /home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/vusynhathoang/miniconda3/envs/biomedparse/include -I/home/vusynhathoang/miniconda3/envs/biomedparse/include -fPIC -O2 -isystem /home/vusynhathoang/miniconda3/envs/biomedparse/include -fPIC -I/home/vusynhathoang/miniconda3/envs/biomedparse/include/python3.9 -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread -B /home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat _configtest.o -o _configtest
/home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat/ld: warning: libopen-rte.so.40, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link)
/home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat/ld: warning: libopen-pal.so.40, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link)

**AT LEAST 50 ERRORs like these in between.**

/home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_set_value_uint64'
/home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `MPIR_being_debugged'
/home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_list_t_class'
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
error: Cannot link MPI programs. Check your configuration!!!
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for mpi4py
Failed to build mpi4py
ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (mpi4py)

Я пробовал установить его с помощью pip и conda, но все равно получаю ошибку. Я также попробовал следующие ответы:

• Ошибка при установке mpi4py
• ОШИБКА: не удалось создать колеса для mpi4py, который необходим для установки проектов на основе pyproject.toml.
• Невозможно установить mpi4py с помощью pip — Не удалось построить колесо
• Не удалось собрать mpi4py в Ubuntu 20.04
• Не удалось установить mpi4py с помощью pip

Но все равно не повезло!

Подробнее здесь: https://stackoverflow.com/questions/793 ... ild-wheels